Publications

2022

Unifying model for three forms of contextual modulation including feedback input from higher visual areas

View ORCID ProfileSerena Di Santo, Mario Dipoppa, Andreas Keller, Morgane Roth, Massimo Scanziani, Kenneth D. Miller

Data Augmentation for Compositional Data: Advancing Predictive Models of the Microbiome

Elliott Gordon-Rodriguez, Thomas P. Quinn, John P. Cunningham

Data Augmentation for Compositional Data: Advancing Predictive Models of the Microbiome

Elliott Gordon-Rodriguez, Thomas P. Quinn, John P. Cunningham

Neural learning rules for generating flexible predictions and computing the successor representation

Ching Fang, View ORCID ProfileDmitriy Aronov, L.F. Abbott, Emily Mackevicius

Sparse RNNs can support high-capacity classification

Denis Turcu, L. F. Abbott

Reconstruction of neocortex: Organelles, compartments, cells, circuits, and activity

Nicholas L. TurnerThomas MacrinaJ. Alexander BaeR. Clay ReidNuno Macarico da CostaH. Sebastian Seung

Divisive Feature Normalization Improves Image Recognition Performance in AlexNet

Michelle Miller, SueYeon Chung, Kenneth D. Miller

Spike sorting pipeline for the International Brain Laboratory

International Brain Laboratory* , Kush Banga1 , Julien Boussard3 , Gaëlle A Chapuis5 , Mayo Faulkner1 , Kenneth D Harris1 , Julia M. Huntenburg6 , Cole Hurwitz3 , Hyun Dong Lee3 , Liam Paninski3 , Cyrille Rossant1 , Noam Roth4 , Nicholas A. Steinmetz4 , C

On the Normalizing Constant of the Continuous Categorical Distribution

Elliott Gordon-Rodriguez, Gabriel Loaiza-Ganem, Andres Potapczynski, John P. Cunningham

SemiMultiPose: A Semi-supervised Multi-animal Pose Estimation Framework

Ari Blau, Christoph Gebhardt, Andres Bendesky, Liam Paninski, Anqi Wu

Blind demixing methods for recovering dense neuronal morphology from barcode imaging data

Shuonan Chen ,Jackson Loper,Pengcheng Zhou,Liam Paninski

Hierarchical architecture of dopaminergic circuits enables second-order conditioning in Drosophila

View ORCID ProfileDaichi Yamada, View ORCID ProfileDaniel Bushey, View ORCID ProfileLi Feng, View ORCID ProfileKaren Hibbard, View ORCID ProfileMegan Sammons, View ORCID ProfileJan Funke, View ORCID ProfileAshok Litwin-Kumar, View ORCID ProfileTos

Connectomic Analysis of the Drosophila Lateral Neuron Clock Cells Reveals the Synaptic Basis of Functional Pacemaker Classes

Shafer, O.T., Gutierrez, G.J., Li, K., Mildenhall, A., Spira, D., Marty, J., Lazar, A.A., Fernandez, M.P.

Flexible neural control of motor units

Marshall, N.J., Glaser, J.I., Trautmann, E.M., Amematsro, E.A., Perkins, S.M., Shadlen, M.N., Abbott, L.F., Cunningham, J.P., Churchland, M.M.

Biological underpinnings for lifelong learning machines

Dhireesha Kudithipudi, Mario Aguilar-Simon, Jonathan Babb, Maxim Bazhenov, Douglas Blackiston, Josh Bongard, Andrew P. Brna, Suraj Chakravarthi Raja, Nick Cheney, Jeff Clune, Anurag Daram, Stefano Fusi, Peter Helfer, Leslie Kay, Nicholas Ketz, Zsolt Kira,

Optimal routing to cerebellum-like structures

View ORCID ProfileSamuel Muscinelli, Mark Wagner, Ashok Litwin-Kumar

The lateral intraparietal area preferentially supports stimulus selection in directed tasks compared to undirected free behavior

W. Jeffrey Johnston, Stephanie M. Tetrick, David J. Freedman

Emergence of Irregular Activity in Networks of Strongly Coupled Conductance-Based Neurons

Sanzeni, A., Histed, M.H., Brunel, N.

Influence of sensory modality and control dynamics on human path integration

Stavropoulos, A., Lakshminarasimhan, K., Laurens, J., Pitkow, X., Angelaki, D.E.

Deep Ensembles Work, But Are They Necessary?

Taiga Abe, E. Kelly Buchanan, Geoff Pleiss, Richard Zemel, John P. Cunningham

Sparse balance: excitatory-inhibitory networks with small bias currents and broadly distributed synaptic weights

Khajeh, R., Fumarola, F., Abbott, L.F.

Connectomics: Relating synaptic connectivity to physiology

IshaniGanguly AshokLitwin-Kumar

The Implicit Bias of Gradient Descent on Generalized Gated Linear Networks

Lippl, S., Abbott, L.F., Chung, S.

Variational Nearest Neighbor Gaussian Processes

Luhuan Wu, Geoff Pleiss, John Cunningham

Meta-learning synaptic plasticity and memory addressing for continual familiarity detection

Tyulmankov, D., Yang, G.R., Abbott, L.F.

The geometry of hippocampal CA2 representations enables abstract coding of social familiarity and identity

Boyle, L., Posani, L., Irfan, S., Siegelbaum, S.A., Fusi, S.

Input correlations impede suppression of chaos and learning in balanced rate networks

Engelken, R., Ingrosso, A., Khajeh, R., Goedeke, S., Abbott, L.F.

Dynamical Latent State Computation in the Posterior Parietal Cortex

Lakshminarasimhan, K., Avila, E., Pitkow, X., Angelaki, D.E.

A human-specific modifier of cortical connectivity and circuit function

Schmidt, E.R.E., Zhao, H.T., Park, J.M., Dipoppa, M., Monsalve-Mercado, M.M., Dahan, J.B., Rodgers, C.C., Lejeune, A., Hillman, E.M.C., Miller, K.D., Bruno, R.M., Polleux, F.

Building an allocentric travelling direction signal via vector computation

Lyu, C., Abbott, L.F., Maimon, G.

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